PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178528.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 176aa    MW: 19285 Da    PI: 7.0827
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.84.6e-4461051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq++++ql+ +la
  XP_019178528.1   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQEVPVKQRGDAVSSLVYEAHARVRDPVYGCVGAISFLQNEVSQLQMQLA 100
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019178528.1 101 VAQAE 105
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MGGNSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK IFGASNVSKM LQEVPVKQRG  60
DAVSSLVYEA HARVRDPVYG CVGAISFLQN EVSQLQMQLA VAQAEILCIQ MHHQDPAATF  120
PDDDDHQKSL LFSPATINAA AVTTANFGTN LQQYLSFAPS SSAVMQDPLK RESLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-74LBD family protein