PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178569.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 270aa    MW: 30183.9 Da    PI: 5.6766
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.6e-2173160291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn YA++vGFsvrk +++++  +++i +++f C k g++e+ ++    +  ++   rtgC a ++    +dg w vtk ++e nHel++
  XP_019178569.1  73 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKEKPNSG--VKLYSKIDMRTGCGALVQFDVGTDGMWTVTKHVKEYNHELCS 160
                     7***************************************999887..888999**********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEETAVRGED SIVDLISAIP VSMQFELNED FVGDLLNTDQ ADVNIDIGGS SSSPVDEDLV  60
GVVVSNSDEA FELYNGYAYR VGFSVRKGQQ RYKASTKSIQ MKRFFCAKAG YKEKPNSGVK  120
LYSKIDMRTG CGALVQFDVG TDGMWTVTKH VKEYNHELCS FGKSHLLRSH RRVGNNHLEY  180
LKDMKNSGVA LADGMRFLKH QSGGSPLVSF TNRDAYNSMA SESLKCLDET DSNSLIEIFR  240
RRQSNEADFF FDFEVDLNGR LCSFFGGMVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-18FAR1 family protein