PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178624.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 637aa MW: 72783.5 Da PI: 9.2653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.5	2.1e-18	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+g+ t ++ vC++e ++++ ++ ++++r ++++rtgC+a++ k + ++vt++ + XP_019178624.1 64 EFYNNYAAKVGFDTRSSSLIRA-RDGTKTLKQIVCNRERFKNTGAQHchsksnadagegPSRSKRWSVSNRTGCRARIIFKYIGVAGYQVTTFIE 157 6***************9998.7888999********999999999*99988999999************************ PP FAR1 84 eHnHela 90 +HnH+++ XP_019178624.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MEEFDQVPSD LQSPNNPSLS PSSSSNGYTL TISPGMTQYW TPHCEDEIKP AVDMIFKTLD 60 AGIEFYNNYA AKVGFDTRSS SLIRARDGTK TLKQIVCNRE RFKNTGAQHC HSKSNADAGE 120 GPSRSKRWSV SNRTGCRARI IFKYIGVAGY QVTTFIEKHN HSMSSVLARQ FLNGNRNISS 180 VHQMFILDCA KANIGAIKIT RYDLVFTPFT GIDNHKKCIT FGAGLLLNED IESYVWLFEK 240 FKKAMGMEPK IIVTDQDPAM KMAIPRVFKQ ARHRYCMWHI MCKVGEKVGP TLNKNEEFKN 300 KLNSIVWTSS LEPNDFEKQW RELMEKYNLV EHNWFTTMFE ARNHWIPAYF RDDFMGGLLR 360 TTSRSESENY TYSRFTGPQS SLVEFMMNFG SALKSQRNTK AKLNSDNEGY NPDMKTPLGI 420 EKHASIVYTI TVFYQVQEEI CASCLCCKMF EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT 480 KDASLKATFE IDGVIYDQNG PKDEKKMLLN KLWSDVHCCI DLVGSNMEQL AAFSQVINEQ 540 KQLLMSGKEK LSPQHSRKTV IESFCGSTEI SEINILPPKH AKNKGSGKRI KSSKELAMEK 600 EKGRRCNFCG VRGDQHDTRT CPLNPKNKDK QNGKKKA

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MEEFDQVPSD LQSPNNPSLS PSSSSNGYTL TISPGMTQYW TPHCEDEIKP AVDMIFKTLD  60
AGIEFYNNYA AKVGFDTRSS SLIRARDGTK TLKQIVCNRE RFKNTGAQHC HSKSNADAGE  120
GPSRSKRWSV SNRTGCRARI IFKYIGVAGY QVTTFIEKHN HSMSSVLARQ FLNGNRNISS  180
VHQMFILDCA KANIGAIKIT RYDLVFTPFT GIDNHKKCIT FGAGLLLNED IESYVWLFEK  240
FKKAMGMEPK IIVTDQDPAM KMAIPRVFKQ ARHRYCMWHI MCKVGEKVGP TLNKNEEFKN  300
KLNSIVWTSS LEPNDFEKQW RELMEKYNLV EHNWFTTMFE ARNHWIPAYF RDDFMGGLLR  360
TTSRSESENY TYSRFTGPQS SLVEFMMNFG SALKSQRNTK AKLNSDNEGY NPDMKTPLGI  420
EKHASIVYTI TVFYQVQEEI CASCLCCKMF EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT  480
KDASLKATFE IDGVIYDQNG PKDEKKMLLN KLWSDVHCCI DLVGSNMEQL AAFSQVINEQ  540
KQLLMSGKEK LSPQHSRKTV IESFCGSTEI SEINILPPKH AKNKGSGKRI KSSKELAMEK  600
EKGRRCNFCG VRGDQHDTRT CPLNPKNKDK QNGKKKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-52	FAR1 family protein