PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178657.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 463aa MW: 51144.5 Da PI: 6.1488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.1e-13	317	363	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f+ Lr ++P+ + K++Ka+ L A+ YI +Lq XP_019178657.1 317 NHVEAERQRREKLNQRFFALRAVVPNiS------KMDKASLLGDAIAYITDLQ 363 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGKKKFCLNE EDRAVMEGVL GSEAVEFFSW LGLNNMNSEF SVSGGNLGVQ VGLQKIVEGS 60 DWTYAIYWQV AKSKSGKSAL IWGDGHCPEA IRRKNKDENG GVNGSSVING DKRKQALEMV 120 QASFGGSEED RFEGKLDSGS DVEMFYLTSM HFVFPFDKPS SPSQSFNSGR TIWVSDAKNC 180 LEHYQSRSHL AKMARFETLA FIPLKSGVVE LGSLKSIPEQ QNVVQMAQKM AVVASNASQA 240 KAFPKIFGRE LSLECAKAEE EPGYPSDAYE LQSLGNNQVT GGDLSSQAED NASLQPDERK 300 PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFFALRAVV PNISKMDKAS LLGDAIAYIT 360 DLQARIRAME AEEETKDGPQ RQNGVPDIDF CQRRDDAVIR IGCSLDAHPV SRVVKAFRQH 420 QVMADESSVS VTENDEVVHT FSIRAQGAAV EQLKEKLAAS LSL

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGKKKFCLNE EDRAVMEGVL GSEAVEFFSW LGLNNMNSEF SVSGGNLGVQ VGLQKIVEGS  60
DWTYAIYWQV AKSKSGKSAL IWGDGHCPEA IRRKNKDENG GVNGSSVING DKRKQALEMV  120
QASFGGSEED RFEGKLDSGS DVEMFYLTSM HFVFPFDKPS SPSQSFNSGR TIWVSDAKNC  180
LEHYQSRSHL AKMARFETLA FIPLKSGVVE LGSLKSIPEQ QNVVQMAQKM AVVASNASQA  240
KAFPKIFGRE LSLECAKAEE EPGYPSDAYE LQSLGNNQVT GGDLSSQAED NASLQPDERK  300
PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFFALRAVV PNISKMDKAS LLGDAIAYIT  360
DLQARIRAME AEEETKDGPQ RQNGVPDIDF CQRRDDAVIR IGCSLDAHPV SRVVKAFRQH  420
QVMADESSVS VTENDEVVHT FSIRAQGAAV EQLKEKLAAS LSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	307	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-130	bHLH family protein