PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178710.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 698aa MW: 76876.8 Da PI: 9.5876

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.2e-07	599	648	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_019178710.1 599 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 648 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MVLQKRLDYG FNGYRVPPMP RSTRSARKRG VNWRRVEGSP MCSFDLLATV AGKLLLEGES 60 SCSLEKDSVD REKGNEDRTM QEKPGNNQGS CERNFFLSKL VSQAPVFSNF SYDSLSPKSV 120 ITTSDSSDKF APVEQLVNAG SKLEPGSVDR KGDAGVSGCK VFSSCKLGTG VAKPRKHEVK 180 VSSDTKVWDR KPCSTFVCSD NSVKMLTLSK DHIPCGSFPA SRGNVKLGNR DDDENSSVCT 240 QPSTANKAFE PALPRIGDQR IGKLLASEYC EVNPKSNYEE HRNAGEVLAT KPALGNKKNN 300 LKSERSLRDY PFKKRKLYDC SSVSNSNSDR AISNDGNCSS HTKGYNGDAS NYTPPTAQKT 360 AGTSTSAAGG CAFFRTGDSQ VKLRIKSFRV PELFVEIPET STVGSLKRTV MEAVTTILGG 420 GLHVGVLFQG KKIRDDDKTL LQTGISRDDK PDTLGFSLEP IPPKASSLEP IPHKASSLEP 480 IPHKASPPPF PEERPYLLSC DTPQPLRRYT PSPRSMVHDV VQQRPADTLR DSSPGTNLIN 540 FIESDHDSAP SPPDTSLDKS AAEDSRALVP VPAVNMAEPH DVVPVRKPKR SEAAQRRIRR 600 PFSVSEVEAL VQAVEKLGTG RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR 660 GEPVPQELLD RVLIAHAYWS QQQAKQQMKQ QAETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MVLQKRLDYG FNGYRVPPMP RSTRSARKRG VNWRRVEGSP MCSFDLLATV AGKLLLEGES  60
SCSLEKDSVD REKGNEDRTM QEKPGNNQGS CERNFFLSKL VSQAPVFSNF SYDSLSPKSV  120
ITTSDSSDKF APVEQLVNAG SKLEPGSVDR KGDAGVSGCK VFSSCKLGTG VAKPRKHEVK  180
VSSDTKVWDR KPCSTFVCSD NSVKMLTLSK DHIPCGSFPA SRGNVKLGNR DDDENSSVCT  240
QPSTANKAFE PALPRIGDQR IGKLLASEYC EVNPKSNYEE HRNAGEVLAT KPALGNKKNN  300
LKSERSLRDY PFKKRKLYDC SSVSNSNSDR AISNDGNCSS HTKGYNGDAS NYTPPTAQKT  360
AGTSTSAAGG CAFFRTGDSQ VKLRIKSFRV PELFVEIPET STVGSLKRTV MEAVTTILGG  420
GLHVGVLFQG KKIRDDDKTL LQTGISRDDK PDTLGFSLEP IPPKASSLEP IPHKASSLEP  480
IPHKASPPPF PEERPYLLSC DTPQPLRRYT PSPRSMVHDV VQQRPADTLR DSSPGTNLIN  540
FIESDHDSAP SPPDTSLDKS AAEDSRALVP VPAVNMAEPH DVVPVRKPKR SEAAQRRIRR  600
PFSVSEVEAL VQAVEKLGTG RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR  660
GEPVPQELLD RVLIAHAYWS QQQAKQQMKQ QAETCLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	316	LRDYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-138	MYB_related family protein