PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178781.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 162aa    MW: 17986.9 Da    PI: 7.2431
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-3814110197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+k C++ pyfp ++p++fa+vh++FGasn++k+l+++p + r da+ s+vyeA ar+rdP+yG+vg+i+ lq+++ +l+++l+
  XP_019178781.1  14 PCAACKLLRRRCTKYCIFLPYFPPTHPERFAAVHQIFGASNITKMLQEVPVDSRADAVMSMVYEATARLRDPIYGCVGIISILQKNVFELQSKLN 108
                     7******************************************************************************************9998 PP

          DUF260  96 ll 97 
                     + 
  XP_019178781.1 109 ES 110
                     75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MMSSTSSNKN SIMPCAACKL LRRRCTKYCI FLPYFPPTHP ERFAAVHQIF GASNITKMLQ  60
EVPVDSRADA VMSMVYEATA RLRDPIYGCV GIISILQKNV FELQSKLNES VAETMALKTQ  120
LSNVLSSSLL YDPALPDTML LTSDLSNSSQ PAEFLNPEPY IV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-49LBD family protein