PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178782.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 150aa MW: 16718.5 Da PI: 6.4919

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.4e-38	2	98	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+C+k C++ pyfp ++p++fa+vh++FGasn++k+l+++p + r da+ s+vyeA ar+rdP+yG+vg+i+ lq+++ +l+++l++ XP_019178782.1 2 PCAACKLLRRRCTKYCIFLPYFPPTHPERFAAVHQIFGASNITKMLQEVPVDSRADAVMSMVYEATARLRDPIYGCVGIISILQKNVFELQSKLNES 98 7******************************************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence
MPCAACKLLR RRCTKYCIFL PYFPPTHPER FAAVHQIFGA SNITKMLQEV PVDSRADAVM 60 SMVYEATARL RDPIYGCVGI ISILQKNVFE LQSKLNESVA ETMALKTQLS NVLSSSLLYD 120 PALPDTMLLT SDLSNSSQPA EFLNPEPYIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-48	LBD family protein