PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178786.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 235aa    MW: 25104.9 Da    PI: 7.0154
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.71.9e-387105198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+  l+++l
  XP_019178786.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNVAKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVDLQEQL 101
                     7*************************89*****************************************************************99 PP

          DUF260  95 allk 98 
                      +lk
  XP_019178786.1 102 ISLK 105
                     7766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGASHFAAI HKVFGASNVA KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVDLQEQ LISLKKLAAN NQSNNLNDSM  120
ASANPNDRSN NGTPCYPSSL QDVHNWFHYS SQNPTAAAVC GGAMAAAAAE FYPAASSNAC  180
SNGGNLHPAA IYYSNINENP IYMGSNNIGN NYSYADASSS SMDDLQSAAL RFLHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-59LBD family protein