PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178901.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 617aa MW: 71623.9 Da PI: 9.3827

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.5e-26	29	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YAk+ GF++rk++ +ks++n+ ++ ++fvCskeg+r+++ + ++k++ ++ etr+gCka++ v++++++kw ++k+ +HnH la XP_019178901.1 29 CYTNYAKQEGFEIRKNRIQKSRKNQMVIGQEFVCSKEGYRAKKYLErDNKKKPPSDETRMGCKAMIYVSRKDEDKWIISKFTRDHNHVLA 118 69*************************************998874566677999*****************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MPVQSDVNNE TIELCIGMEF QSLDDALMCY TNYAKQEGFE IRKNRIQKSR KNQMVIGQEF 60 VCSKEGYRAK KYLERDNKKK PPSDETRMGC KAMIYVSRKD EDKWIISKFT RDHNHVLASS 120 SSARFHRVHR KRTKSQRNLI DVLDESGIRP SKIMSVLVTE SGGIDRVGCT ERDIQNYLSN 180 KRQKQLEKGD AQAMLNYFKE CQSKNPGFFY AIQMDTEGQL ANCFWVDSRS RVAYKFFGDV 240 VTFDPTYLTN SWLEKLYSIR EKWIPAYVLT SFCAGMSTTQ RSESMNKYFK DYINANTPIS 300 KFVVQYDKAL DARYNKEREK TFKTLNSKPI LKTLYPMEEE ASNVYTRKRF RMFQDELIHS 360 QQFVAKKIIT IEHESVYRVH EFDKEKSEYI VTFMSSSTTI ECSCHMFEFL GILCRHQLMV 420 LIKKNVYSLP KHYILKRWTT DAKKGEITST SNKEEMSDVN MCSTTLFNNI MVHSLQLSEK 480 VSRSKKHYDT TIEGMQCLFK KLDALKIDDG ITSSTGCLTS IISHQDDDDN NVAMRDPPRV 540 TTKGRPQSIR MKGALELKSN GVTCSTCKKK GHTKHTCTLK NKNMMDNNRQ LGQMKRTDFD 600 ENNEDIKKCG SFYVSSS

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MPVQSDVNNE TIELCIGMEF QSLDDALMCY TNYAKQEGFE IRKNRIQKSR KNQMVIGQEF  60
VCSKEGYRAK KYLERDNKKK PPSDETRMGC KAMIYVSRKD EDKWIISKFT RDHNHVLASS  120
SSARFHRVHR KRTKSQRNLI DVLDESGIRP SKIMSVLVTE SGGIDRVGCT ERDIQNYLSN  180
KRQKQLEKGD AQAMLNYFKE CQSKNPGFFY AIQMDTEGQL ANCFWVDSRS RVAYKFFGDV  240
VTFDPTYLTN SWLEKLYSIR EKWIPAYVLT SFCAGMSTTQ RSESMNKYFK DYINANTPIS  300
KFVVQYDKAL DARYNKEREK TFKTLNSKPI LKTLYPMEEE ASNVYTRKRF RMFQDELIHS  360
QQFVAKKIIT IEHESVYRVH EFDKEKSEYI VTFMSSSTTI ECSCHMFEFL GILCRHQLMV  420
LIKKNVYSLP KHYILKRWTT DAKKGEITST SNKEEMSDVN MCSTTLFNNI MVHSLQLSEK  480
VSRSKKHYDT TIEGMQCLFK KLDALKIDDG ITSSTGCLTS IISHQDDDDN NVAMRDPPRV  540
TTKGRPQSIR MKGALELKSN GVTCSTCKKK GHTKHTCTLK NKNMMDNNRQ LGQMKRTDFD  600
ENNEDIKKCG SFYVSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-52	FAR1 family protein