PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178940.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 200aa    MW: 22218.5 Da    PI: 7.3431
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.81.3e-31105161158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+kl +++rkpylheSRh hAlrR+Rg+gG+F
  XP_019178940.1 105 EEPVFVNAKQYHGILRRRQSRAKAESENKL-HRNRKPYLHESRHLHALRRARGCGGQF 161
                     69****************************.*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MTSSDHDLSD NSETGQHENQ SSPPSQVMPH PGTVAPMPSG ILPQLGNGNA MAQTGYPYPD  60
PYYRSIFAPY DTQPYPQHFP AQSMVNLQLM GVQQAGVPLP SDAVEEPVFV NAKQYHGILR  120
RRQSRAKAES ENKLHRNRKP YLHESRHLHA LRRARGCGGQ FLTSKKSDEN QQKKEELCDK  180
SQPTGNHNSE NCDVASENGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-66NF-YA family protein