PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178943.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 196aa    MW: 21764 Da    PI: 7.3431
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.3e-31101157158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+kl +++rkpylheSRh hAlrR+Rg+gG+F
  XP_019178943.1 101 EEPVFVNAKQYHGILRRRQSRAKAESENKL-HRNRKPYLHESRHLHALRRARGCGGQF 157
                     69****************************.*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MTSSDHDLSD NSETGQHENQ SSPPSQVMPH PGTVAPMPSG ILPQLGNGNA MAQTGYPYPD  60
PYYRSIFAPY DTQPYPQHFP AQSMLMGVQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS  120
RAKAESENKL HRNRKPYLHE SRHLHALRRA RGCGGQFLTS KKSDENQQKK EELCDKSQPT  180
GNHNSENCDV ASENGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-63NF-YA family protein