PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178963.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 877aa    MW: 96037.2 Da    PI: 6.412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.7e-1848106357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019178963.1  48 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 106
                     6789*****************************************************97 PP
2START169.52.2e-531964032204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a ra+g+v  +++  v+e+l+d++ W ++++  ++l v+ +g  g+++l+
  XP_019178963.1 196 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAGRACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSVLPTGngGTIELI 289
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s++  p+     s+vRae+lpSg+li+p+++g+s +++v+hvdl+++ ++++lr+l+
  XP_019178963.1 290 YMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLSSKTGGPSgppATSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWNVPEVLRPLY 384
                     *****************************************99999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  XP_019178963.1 385 ESSKILVQKMTMAALRHIR 403
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    
MIKSKHPGDL SLSLLFSYRG AVGTGESSNS GGSNSSGKHQ QHQMDSSKYV RYTPEQVEAL  60
ERVYSECPKP SSLRRQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL  120
SAMNKLLMEE NDRLQKQVSQ LVYENGYMRT QLHTVNTTTT DTSCESVVVS GQQQQQNPTP  180
QHPQRDANNP AGLLAIAEET LAEFLGKATG TAVDWVQMIG MKPGPDSIGI VAVSRNCSGV  240
AGRACGLVSL EPTKVAEILK DRPSWYRDCR CLDVLSVLPT GNGGTIELIY MQTYAPTTLA  300
SARDFWTLRY TTSLEDGSLV ICERSLSSKT GGPSGPPATS FVRAEMLPSG YLIRPCEGGG  360
SIIHIVDHVD LDAWNVPEVL RPLYESSKIL VQKMTMAALR HIRQIAQETS GEIQYSGGRQ  420
PAVLRALSQR LCRGFNDAVN GFVDDGWTVL GSDGVEDVTI AINSSPSKFL GSQYNNLSML  480
PTFGGVLCAR ASMLLQNVPP ALLVRFLREH RSEWADYGVD AYSAASLKAS PYAVPCARPG  540
GFPSSQVILP LAQTVEHEEF LEVVRLEGHA FSPEDIALSR DMYLLQLCSG IDENAAGACA  600
QLVFAPIDES FGDDAPLLPS GFRVIPVEPK SDAPGTTRTL DLASTLEAGN GGSTRPAGGE  660
VESNNYNLRS VLTIAFQFTF ENHYRDNVAA MARQYVRSIV SSVQRVAMAI APSQLSSNLT  720
PRPLPGSPEA ITLARWICRS YRMHTGSELL QLESQAGDAV LKQLWHHSDA IMCCSVKMNA  780
SAVFTFANQA GLDLLETTLL ALQDIMLDKI LDEAGRKVLV SEFSKIMQQG FAYLPAGICV  840
SSMGRPVSYE QAVAWKVLND DDTNHCLAFM FVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein