PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178968.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 178aa MW: 18441.4 Da PI: 8.2892

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.3	5.2e-13	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_019178968.1 7 CSGCRTILLYPRGATNVCCAVCNA 30 **********************97 PP
2	zf-LSD1	46.9	4.5e-15	49	73	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV XP_019178968.1 49 CGGCRTLLMHPRGATSVRCSCCHTV 73 ************************9 PP
3	zf-LSD1	44.6	2.4e-14	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+++ XP_019178968.1 87 CGNCRTMLMYPCGAPSVKCAVCHFI 111 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MGQMAQLICG GCRTLLMHPR 60 GATSVRCSCC HTVNLVPGPN QFAHINCGNC RTMLMYPCGA PSVKCAVCHF ITNVNAGDAR 120 VPIPSHPPNG SATSSSAPPS STAAPRSQNQ TVVVQNPMSV DESGKLVSNV VVGVTTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	8e-60	LSD family protein