PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178983.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 629aa MW: 71456.7 Da PI: 7.9525

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.7	7.4e-08	99	140	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ +r+r+++rtgC+a++ k ++v+++ ++HnH+++ XP_019178983.1 99 SHPKRQRVSNRTGCRARIIFKYIGVVGYQVKTFIEKHNHNMS 140 467899*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MSPDMQYSSV GVSSEQIVTE AHIPVPAVVN NSLSNAHFPS DLQSLNNPSL SPSSSNNGYT 60 LTISPGMTQY WTPHCEDEIK PVADMTFKTL DADAGEGPSH PKRQRVSNRT GCRARIIFKY 120 IGVVGYQVKT FIEKHNHNMS SVLARQFLKG NRNISIVHQK FILDCGKANI GASKSHEMCP 180 AFAFHYEVDE DKQMSRLFWA DPMSKKNFAA FGDVVSFDAT YSTNRYNMAF TPFTEAMGME 240 TRIIVTDQDP AMKVAIPRVF KQARHRYCMW HIMCKVGEKV GPMLNKNEEF KNTLNSIVWT 300 SSLEPTDFEK QWRELMEMYN LVKNNCFTTM FEARNHWIPA YFRDVFMGGL LRTTSRSESE 360 NYTYNRFTGP QSSLVEFMMN FDSALKSQRN TNAKLNSDNE GNNPDMKTPL GIEKHASIVY 420 TITVFYQVQE EICASCFKCM VLSVREDGGM LHYDIMDGKN KIFSVVHNVN DHEATCSCKM 480 FEMNGPKDAK KMLLNKLWAD VHCCIDLAGS NMEQLAAFLQ VINEQKQLLM SGKQKLSPQH 540 SRKTVIESFC GSTEISEINI LPPKYAKNKG SGKHIKSIKE LAMEKEKGSM KAKKHFMALT 600 AIQQGETETL KEFLKRWQKE VQAVEDLDD

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MSPDMQYSSV GVSSEQIVTE AHIPVPAVVN NSLSNAHFPS DLQSLNNPSL SPSSSNNGYT  60
LTISPGMTQY WTPHCEDEIK PVADMTFKTL DADAGEGPSH PKRQRVSNRT GCRARIIFKY  120
IGVVGYQVKT FIEKHNHNMS SVLARQFLKG NRNISIVHQK FILDCGKANI GASKSHEMCP  180
AFAFHYEVDE DKQMSRLFWA DPMSKKNFAA FGDVVSFDAT YSTNRYNMAF TPFTEAMGME  240
TRIIVTDQDP AMKVAIPRVF KQARHRYCMW HIMCKVGEKV GPMLNKNEEF KNTLNSIVWT  300
SSLEPTDFEK QWRELMEMYN LVKNNCFTTM FEARNHWIPA YFRDVFMGGL LRTTSRSESE  360
NYTYNRFTGP QSSLVEFMMN FDSALKSQRN TNAKLNSDNE GNNPDMKTPL GIEKHASIVY  420
TITVFYQVQE EICASCFKCM VLSVREDGGM LHYDIMDGKN KIFSVVHNVN DHEATCSCKM  480
FEMNGPKDAK KMLLNKLWAD VHCCIDLAGS NMEQLAAFLQ VINEQKQLLM SGKQKLSPQH  540
SRKTVIESFC GSTEISEINI LPPKYAKNKG SGKHIKSIKE LAMEKEKGSM KAKKHFMALT  600
AIQQGETETL KEFLKRWQKE VQAVEDLDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-50	FAR1 family protein