PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179035.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 752aa MW: 86115.1 Da PI: 7.6365

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.7e-20	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA ++GFsvr+ k+++s+ +++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019179035.1 48 DMYNDYAFRIGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 134 58**************************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MSDSIAQQDV AETEHTTDHV GVVDTEDANP ADQDLVGMSV CSVDEAYDMY NDYAFRIGFS 60 VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI 120 VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP 180 LVGFTSMDAY NSLCIDALNR LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW 240 RDGWMRRDYD LFGDLLVHDT TYRTNKYDMI CGPFVGMNNH CMNVMFGCGF LMNEKIESFV 300 WLFKTFLRSM DYKSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRSQ 360 KDFLDIFNCL LKYMDTEAEF EFYWTRMVTT YKCHNNHWIE KLYGCREKWC PAFNKDYFSS 420 GILSSQRSET TNHSISRRLS KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD 480 NVKILLHARE IYTIEIYYLF EEQFLKGGSC YQECAMLEDG VYKYHVWRLD VDIIRHEVVF 540 NSRQMDIGCS CKLFTELGIL CCHCLRILNV HCVSEVPEKY ILKRWTKKVV EVDNVDIMSR 600 VDSGNGASSV WLLEIIRKFQ RLAVYSQENI EGRKICEEAI ADAKRRLEAE CGGSLFEDCD 660 IGSTSGVIKD PSTRRMKGLR NRRVSSVISK KYNKARGRKH LANMVASKIK SVVQSQVEGD 720 ILNIAGDGYL VHPSSGGSSF CHVSTMSSMD DN

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MSDSIAQQDV AETEHTTDHV GVVDTEDANP ADQDLVGMSV CSVDEAYDMY NDYAFRIGFS  60
VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI  120
VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP  180
LVGFTSMDAY NSLCIDALNR LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW  240
RDGWMRRDYD LFGDLLVHDT TYRTNKYDMI CGPFVGMNNH CMNVMFGCGF LMNEKIESFV  300
WLFKTFLRSM DYKSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRSQ  360
KDFLDIFNCL LKYMDTEAEF EFYWTRMVTT YKCHNNHWIE KLYGCREKWC PAFNKDYFSS  420
GILSSQRSET TNHSISRRLS KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD  480
NVKILLHARE IYTIEIYYLF EEQFLKGGSC YQECAMLEDG VYKYHVWRLD VDIIRHEVVF  540
NSRQMDIGCS CKLFTELGIL CCHCLRILNV HCVSEVPEKY ILKRWTKKVV EVDNVDIMSR  600
VDSGNGASSV WLLEIIRKFQ RLAVYSQENI EGRKICEEAI ADAKRRLEAE CGGSLFEDCD  660
IGSTSGVIKD PSTRRMKGLR NRRVSSVISK KYNKARGRKH LANMVASKIK SVVQSQVEGD  720
ILNIAGDGYL VHPSSGGSSF CHVSTMSSMD DN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-86	FAR1 family protein