PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179126.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 401aa MW: 44903.8 Da PI: 4.8853

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	7.8e-25	287	370	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aLi++r +++++++g k+ Weev++ ++ g++r+p +Ckekwen+nk+ykk++++ k+ ++ ++cpyf++l+ XP_019179126.1 287 RWPKSEVQALITVRLALDDKFQNG-PKGSIWEEVAAGLATMGYTRTPRKCKEKWENINKYYKKMTKSVKSC-PKLYKSCPYFRELD 370 8********************9.99**************************************96.777789***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MEFLTADGRL PNGVVPLPDH FTPFPEPTDD LFINPTASIH PPIFAPCKRR RSVRSRQGQG 60 RNLTMFPEPS CGGDDALLSC NAGELGLLVQ TTMNNGAATS ECPVALTPAS DVAVAGNGCP 120 ATEVPIELQM KSEIDAQFTN IISQARALEA ELSFSSDDSD SSEGEKEPDG ERGESKKQKF 180 AMFLEDMVRK VMDKQEQMHK QLIELMERKE QERILREEDW KQQEIERAKR DAELRSQEMS 240 RSLALLSFLK NLLGEEIQVP SAQVSCPEND ENSIHGQEAK HDSSNRRWPK SEVQALITVR 300 LALDDKFQNG PKGSIWEEVA AGLATMGYTR TPRKCKEKWE NINKYYKKMT KSVKSCPKLY 360 KSCPYFRELD ILYSKGLVAP VTENDVEDVK ETTLECGVNI G

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MEFLTADGRL PNGVVPLPDH FTPFPEPTDD LFINPTASIH PPIFAPCKRR RSVRSRQGQG  60
RNLTMFPEPS CGGDDALLSC NAGELGLLVQ TTMNNGAATS ECPVALTPAS DVAVAGNGCP  120
ATEVPIELQM KSEIDAQFTN IISQARALEA ELSFSSDDSD SSEGEKEPDG ERGESKKQKF  180
AMFLEDMVRK VMDKQEQMHK QLIELMERKE QERILREEDW KQQEIERAKR DAELRSQEMS  240
RSLALLSFLK NLLGEEIQVP SAQVSCPEND ENSIHGQEAK HDSSNRRWPK SEVQALITVR  300
LALDDKFQNG PKGSIWEEVA AGLATMGYTR TPRKCKEKWE NINKYYKKMT KSVKSCPKLY  360
KSCPYFRELD ILYSKGLVAP VTENDVEDVK ETTLECGVNI G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-40	Trihelix family protein