PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179133.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 153aa    MW: 17391.6 Da    PI: 8.3701
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.4e-105981527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f rtG C+yG++C++ H++
  XP_019179133.1 59 VCNRFVRTGSCQYGESCRYYHPK 81
                    6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MPLGKYNCDY CDKEFRDTPA ARRRHLQGIQ HQRAKALWYN SLLTDPLVHN DPESFGKGVC  60
NRFVRTGSCQ YGESCRYYHP KQNTQNMNLE RIRGNAFNDD ILKHNLHCQA FGATSFPGDM  120
FRDKTGASLG TLPPSLMPPP EGGYPPLPFL DWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-30C3H family protein