PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179143.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 273aa MW: 30642.6 Da PI: 9.0909

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ +++ G g+W+++++ g+ R++k+c++rw +yl XP_019179143.1 14 KGLWSPEEDEKLINHIAKSGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	48.3	2.4e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ l+++++++lG++ W+ Ia++++ gRt++++k+ w+ XP_019179143.1 67 RGTFSQEEENLIIELHALLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIA KSGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHALLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLP QVENAEKPQV FNNLVEFNNP KSSQMISGFN PNPNSVLDHH CSSSVKLQGS 180 PAFFNTSGFP WLVSGSEKSE KLSDPEDIKW SEYLLGNAIP NQPEPQFTVT EEGSFSTTAS 240 TWLQNQHPSL QAANLCTGSK PFQRLSAASS QFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	3e-88	MYB family protein