PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179169.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 449aa MW: 51475.9 Da PI: 8.5199

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	3e-20	29	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+g+ t ++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++v+++ + XP_019179169.1 29 EFYNNYAAKVGFDTRSSSLVRA-RDGTKTLKQIVCNREGFKNTGAQHchsksnadagegPSRPKRRRVSNRTGCRARIIFKYIGVAGYQVATFIE 122 6***************9998.7888999********999999999*999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019179169.1 123 KHNHSMF 129 **997 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MTQYWTPHCE DEIKPAVDMI FKTLDAGIEF YNNYAAKVGF DTRSSSLVRA RDGTKTLKQI 60 VCNREGFKNT GAQHCHSKSN ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GVAGYQVATF 120 IEKHNHSMFS VLARQFLKGN RNISSVHQKF ILDCAKENIG TSKSHGLYSQ IVGDYSEVGA 180 TAVDFKNIRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFWADPMS 240 KKNFVAFGDV VSFDATYSTN RYDLVFTPFA GVDNHKKCIT FGAGLLLKEY IESYVWLFEK 300 FKKAMGMEPR IIVTDQDPAM KVAIPRVFKQ ARHRYCMWHI MCKVGEKVGP TLNKNEEFKN 360 KLNSIVWTSS LEPPDFEKQW RELMEKYNLV EHNWFTTMFE ARNHWIAKLK TSLLVPAASN 420 TLPACHNAQL LALDDVWLQH DELAAEIDE

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MTQYWTPHCE DEIKPAVDMI FKTLDAGIEF YNNYAAKVGF DTRSSSLVRA RDGTKTLKQI  60
VCNREGFKNT GAQHCHSKSN ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GVAGYQVATF  120
IEKHNHSMFS VLARQFLKGN RNISSVHQKF ILDCAKENIG TSKSHGLYSQ IVGDYSEVGA  180
TAVDFKNIRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFWADPMS  240
KKNFVAFGDV VSFDATYSTN RYDLVFTPFA GVDNHKKCIT FGAGLLLKEY IESYVWLFEK  300
FKKAMGMEPR IIVTDQDPAM KVAIPRVFKQ ARHRYCMWHI MCKVGEKVGP TLNKNEEFKN  360
KLNSIVWTSS LEPPDFEKQW RELMEKYNLV EHNWFTTMFE ARNHWIAKLK TSLLVPAASN  420
TLPACHNAQL LALDDVWLQH DELAAEIDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-64	FAR1 family protein