PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179196.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22542.8 Da    PI: 9.6726
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-242070151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rie+++ r+v fskRrng++KKA+E+S+LC++e++++ifs++gk y++s+
  XP_019179196.1 20 SRIESDTSRSVAFSKRRNGLIKKANEISTLCGVEILLVIFSPSGKAYTFSN 70
                    59***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSSNNANRRV GRGRQRIPLS RIESDTSRSV AFSKRRNGLI KKANEISTLC GVEILLVIFS  60
PSGKAYTFSN PGMDAILTKY FGANPTAQPY PAEQVPAEQN LRAHREALMQ IMSSQINYLE  120
MQIEEEIKVN KVLREAEKVN PPISELPLSE LPSMKHKMEM LRDLVLQKLL QVPGQAHLDT  180
SSLFGYSQFG ANDNVGPSGG ASAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22M-type_MADS family protein