PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179197.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 199aa MW: 21989.2 Da PI: 8.4686

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73	2.5e-23	20	70	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rie+++ +v fskRrng++KKA+E+S+LC++e++++ifs++gk y++s+ XP_019179197.1 20 SRIESDTSCSVAFSKRRNGLIKKANEISTLCGVEILLVIFSPSGKAYTFSN 70 59***********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MSSNNANRRV GRGRQRIPLS RIESDTSCSV AFSKRRNGLI KKANEISTLC GVEILLVIFS 60 PSGKAYTFSN PGMDAILTKY FGANPTAQPY PAEQNLRAHR EALMQIMTSQ INYLEMQIEE 120 EMEVNKALRE AEKVNPPISE LPLSELPSMK HKMEMLRDLV LQKLMQVPGQ AHLDTSSLFG 180 YSQFGANDNV GPSGGACAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-21	M-type_MADS family protein