PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179202.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 236aa    MW: 26775 Da    PI: 7.2818
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.5e-2048134191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Yn+YA +vGFsvr+ k+++++ +++++++ f Cs+ g+++ + k       ++   rtgC a ++ +++++g w v+k e+ HnHel+p
  XP_019179202.1  48 DMYNDYAFRVGFSVRRGKQRYNSATKTMKTKMFHCSNDGFKRITGKG----CYSKIDGRTGCGAFVQFNLHENGMWIVSKHEKLHNHELVP 134
                     58****************************************99887....88999*********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDESIAQQHV AETEQLTDLV GVADRENVNP TDQDLVGMSV FSVDEAYDMY NDYAFRVGFS  60
VRRGKQRYNS ATKTMKTKMF HCSNDGFKRI TGKGCYSKID GRTGCGAFVQ FNLHENGMWI  120
VSKHEKLHNH ELVPPSKIYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP  180
LVGFTSRDAY NSLCTDALNK LDGTDSNTLI EIFKRRQSSE RDFYLDFDVD LESRHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1 family protein