PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179282.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YC
Protein Properties Length: 133aa    MW: 15270.8 Da    PI: 10.3195
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.23.2e-1716971898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                    + ++P  rikki+k+d++vk++ +ea  l+s++ elf+  l+ +s   a e+kr+t+k   +  av+r   + dfl+d  p 
  XP_019179282.1 16 RLQIPTGRIKKIMKMDDEVKKVNSEALFLISRSTELFLEFLAEKSVEVAVEKKRKTVKLEHLRVAVKRHRpTSDFLLDSLPM 97
                    5689**************************************************************9975389*****9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MAEELPEENG VERTCRLQIP TGRIKKIMKM DDEVKKVNSE ALFLISRSTE LFLEFLAEKS  60
VEVAVEKKRK TVKLEHLRVA VKRHRPTSDF LLDSLPMPSQ PSHQPSKASR SRSDEKPVPH  120
GTRKIDAFFK KCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-46NF-YC family protein