PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179454.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 238aa    MW: 26411.8 Da    PI: 6.2321
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.12.5e-5367161195
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre +g
  XP_019179454.1  67 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREYDG 161
                     69******************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDLGGNGAGF HGYRTRLPHP TSEMKVPLEM NMGLPVGASS PQLKMFNHGG TGNNPVAAAA  60
DDGECTVREQ DRFMPIANVI RIMRKILPPH AKISDDAKET IQECVSEYIS FITGEANERC  120
QREQRKTITA EDVLWAMSKL GFDDYIEPLT LYLHRYREYD GGDRGSLRGD PLLKRTMVDP  180
VNYPPFVQPF PVGHHHAYFG FPPPMNGGGY LQRDESNAGS SQPAPAANID PPYPHCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.13e-68NF-YB family protein