PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179494.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 192aa MW: 22227.4 Da PI: 10.0581

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	4	65	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql +L+el++k r+p+ ++ + ++++l +++ ++V++WFqN++a++++ XP_019179494.1 4 RPRRWSPTPEQLMVLQELYRKgLRNPNSSQVRTITAHLslygKVEGKNVFYWFQNHKARDRQ 65 568***************99***********************************996 PP
2	Wus_type_Homeobox	109.2	2.3e-35	6	66	4	64
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 RW+PtpeQ+++L+ely++Glr+Pn+++++ ita+L+ yGk+e+kNVfyWFQN+kaR+rqk XP_019179494.1 6 RRWSPTPEQLMVLQELYRKGLRNPNSSQVRTITAHLSLYGKVEGKNVFYWFQNHKARDRQK 66 6***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MISRPRRWSP TPEQLMVLQE LYRKGLRNPN SSQVRTITAH LSLYGKVEGK NVFYWFQNHK 60 ARDRQKLRKA LLKQMHHRHL PFPAPPPPPS ATAVTTPNHH PKSLLDSASS HRHSLFNNPN 120 TFLHHQGGDE EGSDMENCMM MRMYGRDWML MMGGMLPTFP CYVDRTPKTL ELFPLKSTNM 180 KDDQSSSNDD NC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	8e-36	WOX family protein