PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179501.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 248aa MW: 27945.5 Da PI: 8.9151

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.8e-32	171	229	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ XP_019179501.1 171 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 229 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSSSSTTSQA MLNQILFHQD VASSSSSLFC VSSNNNIINT AGTALPFESL KTLITPMPTS 60 LASLLPPLVE SSSANSSAFH QTLVEEDLSP LFGPPHHHQL LSLHRSAPNL WAWGEVNECM 120 MRSKRSSGLV VDDHHHHLGV SAVKMKKMSK SRRKVREPRF SFKTMSDVDV LDDGYKWRKY 180 GQKVVKNTQH PRSYYRCTQD NCRVKKRVER LAEDPRMVIT TYEGRHVHSP SHDDDDSQAS 240 SQANDLLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	3e-44	WRKY family protein