PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179671.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 429aa MW: 48232.6 Da PI: 8.6576

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.5	4.2e-19	33	124	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + + + s++ +f++++a XP_019179671.1 33 CWTQEETLALIEAYRERWYALRRGYLRTADWDSVAETVvsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSMSYpAGRFFSNWFFFENMDA 124 8*********************************9988777777789999****************9996678889*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSETTDAVPE AGVDDLAAVV VEEKPGRKFP APCWTQEETL ALIEAYRERW YALRRGYLRT 60 ADWDSVAETV VSRCPDASPA KTSAQCRHKM EKLRQRYRAE KQRSMSYPAG RFFSNWFFFE 120 NMDAMENGTV VSAARSNQEP DKQTISGNAF GLKTLIDQNI LKLKLNPSKL TKSIEDSNPN 180 FGFDQEITPK NFGARVPNGY LSYLDVAASK KEQVDVLHLE NPFGMKTRID GIPIPIGFKP 240 KRSSFNGELK NGFDVVNKEM GKHDRGMNSN LSEYNGINPS EEYIMRVFAD RNSSVHVRGN 300 NGGGAMEDSN HDMGVSSNRF LSSSLPRVGK RISDGSSGVG CKRERNSVDS VDQIAASIRF 360 LGEGFMKIEK MKMEMAKEME QMRMEREMKQ SQMILESQKQ MVDCFMTVLS ELKNSKKAKK 420 TGGEHGQES

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSETTDAVPE AGVDDLAAVV VEEKPGRKFP APCWTQEETL ALIEAYRERW YALRRGYLRT  60
ADWDSVAETV VSRCPDASPA KTSAQCRHKM EKLRQRYRAE KQRSMSYPAG RFFSNWFFFE  120
NMDAMENGTV VSAARSNQEP DKQTISGNAF GLKTLIDQNI LKLKLNPSKL TKSIEDSNPN  180
FGFDQEITPK NFGARVPNGY LSYLDVAASK KEQVDVLHLE NPFGMKTRID GIPIPIGFKP  240
KRSSFNGELK NGFDVVNKEM GKHDRGMNSN LSEYNGINPS EEYIMRVFAD RNSSVHVRGN  300
NGGGAMEDSN HDMGVSSNRF LSSSLPRVGK RISDGSSGVG CKRERNSVDS VDQIAASIRF  360
LGEGFMKIEK MKMEMAKEME QMRMEREMKQ SQMILESQKQ MVDCFMTVLS ELKNSKKAKK  420
TGGEHGQES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-39	Trihelix family protein