PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179745.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 477aa MW: 50120.4 Da PI: 8.3584

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	48	71	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H++ XP_019179745.1 48 ADCIYYLRTGLCGYGARCRFNHPR 71 68********************96 PP
2	zf-CCCH	38.1	2.6e-12	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+++++tG Ck+G +Ck++H++ XP_019179745.1 93 QPLCQYYMKTGMCKFGVSCKYHHPR 117 79*********************96 PP
3	zf-CCCH	39.5	9.6e-13	137	162	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_019179745.1 137 GEKECSYYMKTGQCKFGVTCKFHHPQ 162 7899********************97 PP
4	zf-CCCH	40.4	5e-13	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ XP_019179745.1 303 PGEPECQYYMKTGDCKYGSSCRYHHPQ 329 5799*********************97 PP
5	zf-CCCH	31.7	2.6e-10	352	375	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++++G Ck+G++CkF H++ XP_019179745.1 352 PVCLHYSQNGVCKFGPTCKFDHPM 375 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG 60 YGARCRFNHP RDRSLAVRAM RASGGEYPER VGQPLCQYYM KTGMCKFGVS CKYHHPRQGG 120 GSSLVMMNIY GYPLRPGEKE CSYYMKTGQC KFGVTCKFHH PQPAGAEMPA PTAAPGPLPA 180 APSIYPAVQS PSAQSSQQFG VMAGNWSIAR PALLHGSYMP GAYSPMLFPP GVVPVPGGWT 240 PYPAPVNPAA SPSTQSAAGA GQFYGLTPLS PSAPAYSGVY MYAGSATGPS RVSQREHAFP 300 ERPGEPECQY YMKTGDCKYG SSCRYHHPQE WSGSKANFVL SPIGLPLRPD APVCLHYSQN 360 GVCKFGPTCK FDHPMGTLSY SPSASSLADM PVAPFPVGSS MGTLAPSSSS SDLRPNLTSG 420 SNTEAFSTQI SSMNTSSGTV GSIFSVTGPA PRPGLQQSGQ SYSASGSSSM GHGGIGT

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG  60
YGARCRFNHP RDRSLAVRAM RASGGEYPER VGQPLCQYYM KTGMCKFGVS CKYHHPRQGG  120
GSSLVMMNIY GYPLRPGEKE CSYYMKTGQC KFGVTCKFHH PQPAGAEMPA PTAAPGPLPA  180
APSIYPAVQS PSAQSSQQFG VMAGNWSIAR PALLHGSYMP GAYSPMLFPP GVVPVPGGWT  240
PYPAPVNPAA SPSTQSAAGA GQFYGLTPLS PSAPAYSGVY MYAGSATGPS RVSQREHAFP  300
ERPGEPECQY YMKTGDCKYG SSCRYHHPQE WSGSKANFVL SPIGLPLRPD APVCLHYSQN  360
GVCKFGPTCK FDHPMGTLSY SPSASSLADM PVAPFPVGSS MGTLAPSSSS SDLRPNLTSG  420
SNTEAFSTQI SSMNTSSGTV GSIFSVTGPA PRPGLQQSGQ SYSASGSSSM GHGGIGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-145	C3H family protein