PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179816.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1102aa MW: 123410 Da PI: 8.4257

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	46	79	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE e ++da +++ ++ Wk++a+ ++ +R+ XP_019179816.1 46 QWSKEELESFYDAYREYNKD-WKKVAAAVQ-NRSVD 79 6***************99.*****.975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence
MAPPRQPRSL NKRHSNRNDV SLSNDGDSSK KNMQRKRKYI DMLGPQWSKE ELESFYDAYR 60 EYNKDWKKVA AAVQNRSVDM VEALYTMNRA YLSLPEGIAS VVGLIAMMTD HYCNLVGSDS 120 DQENNEGAGT TRNPQKRARC KVQASKASDL HPSTVASGYD CLALLKSKCS KGDQTRVVGK 180 RTPRFPVSRS NENFKAKKYF SPSRQDLKIN LDAHDDEVAR EIALALAEAS HRGGSPQVSQ 240 TPIHGTDSAL SSPAWTTESN HANLEIANAK VLSSEMDREG SMEVDTRELS SCRNYLMEPG 300 SVGKTMQKGR RLNEKKLKAG ESGDYNFHDI KEVCSGTEDH RLGAVRKKHE MEILNEKVSK 360 TCSQGFRKRS KKVLFQRDEG STFDALQTLA ELSLMMPATE NDDDQVKDEN NHNGESESLE 420 AIPKNLPRDN CGSSGVKSKW SRRISGIVVA SSKASKHVKV SCGAIASPET TEVRKTPKKL 480 VSKMQTSEAC PSNYLSESQE YETKEAPKKL INKGKRSSQN ATPKITKNKK HSVSADPGIN 540 GSDSAQSIAE IPAPDGATLC TKVRSRRKIE LKKPQKQKDL MLPDKILDDN NDRPSASVHD 600 NVSNLKKRLS NCLSDDHVRK WCMFEWFYSA IDYPWFAKKE FVEYLHHVGL GHVPRLTRVE 660 WSVIRSSLGK PRRFSVQFLK EEKEKLNQYR ESVRRHYTEL CEGTREGLPT DLARPLSVGQ 720 RVIAIHPKTM EIHDGSVLTV DHSRCRIQFD LPDLGVEFVK DIDCMPQNPY ENMPTLLARH 780 IDALDLSFEN TPKHKVKAQS NESMKFSSGV LENGDGFLNL SPMNFAINNL LTQTKVTTSS 840 ADWQSNIGTM EPATAYSQPS KMAQHQAKEA DVRALAELMH ALDKKHAVIA ELRHMNDDVM 900 EDQKSSDCTL MDLEPFRKQY ATIVLQLKEV NKQVSSALFH LRQRNTYQDN LSPRPVANFC 960 DPGDMLNTYD HYTGQAQEPG SHVNETIESS KIKARIMVDS VLQEFNGMES TTENVAPDST 1020 LNRPVNGNEA DIPSELISRC VATFLMIQKC TEREFPPAGV AKILDSAVAS LQPRCSQNLP 1080 VYTEIQKCIG VIKNQILALV PT

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence

MAPPRQPRSL NKRHSNRNDV SLSNDGDSSK KNMQRKRKYI DMLGPQWSKE ELESFYDAYR  60
EYNKDWKKVA AAVQNRSVDM VEALYTMNRA YLSLPEGIAS VVGLIAMMTD HYCNLVGSDS  120
DQENNEGAGT TRNPQKRARC KVQASKASDL HPSTVASGYD CLALLKSKCS KGDQTRVVGK  180
RTPRFPVSRS NENFKAKKYF SPSRQDLKIN LDAHDDEVAR EIALALAEAS HRGGSPQVSQ  240
TPIHGTDSAL SSPAWTTESN HANLEIANAK VLSSEMDREG SMEVDTRELS SCRNYLMEPG  300
SVGKTMQKGR RLNEKKLKAG ESGDYNFHDI KEVCSGTEDH RLGAVRKKHE MEILNEKVSK  360
TCSQGFRKRS KKVLFQRDEG STFDALQTLA ELSLMMPATE NDDDQVKDEN NHNGESESLE  420
AIPKNLPRDN CGSSGVKSKW SRRISGIVVA SSKASKHVKV SCGAIASPET TEVRKTPKKL  480
VSKMQTSEAC PSNYLSESQE YETKEAPKKL INKGKRSSQN ATPKITKNKK HSVSADPGIN  540
GSDSAQSIAE IPAPDGATLC TKVRSRRKIE LKKPQKQKDL MLPDKILDDN NDRPSASVHD  600
NVSNLKKRLS NCLSDDHVRK WCMFEWFYSA IDYPWFAKKE FVEYLHHVGL GHVPRLTRVE  660
WSVIRSSLGK PRRFSVQFLK EEKEKLNQYR ESVRRHYTEL CEGTREGLPT DLARPLSVGQ  720
RVIAIHPKTM EIHDGSVLTV DHSRCRIQFD LPDLGVEFVK DIDCMPQNPY ENMPTLLARH  780
IDALDLSFEN TPKHKVKAQS NESMKFSSGV LENGDGFLNL SPMNFAINNL LTQTKVTTSS  840
ADWQSNIGTM EPATAYSQPS KMAQHQAKEA DVRALAELMH ALDKKHAVIA ELRHMNDDVM  900
EDQKSSDCTL MDLEPFRKQY ATIVLQLKEV NKQVSSALFH LRQRNTYQDN LSPRPVANFC  960
DPGDMLNTYD HYTGQAQEPG SHVNETIESS KIKARIMVDS VLQEFNGMES TTENVAPDST  1020
LNRPVNGNEA DIPSELISRC VATFLMIQKC TEREFPPAGV AKILDSAVAS LQPRCSQNLP  1080
VYTEIQKCIG VIKNQILALV PT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein