PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179927.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 155aa    MW: 17539.8 Da    PI: 8.7247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31.1e-1755151189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY +YA+++GF+vr++++k+  r+g+i+++   Cs+ g++ ++++           + +++r+r+++r+gC+ ++  k+   g +ev+ +e+ H
  XP_019179927.1  55 EFYTTYASTTGFDVRRASQKND-RQGQIMWKYVLCSRAGFKLSTSEGdgvgvesaehNAQTKRRRVTNRVGCNTRIIFKRI-LGGYEVHAIEERH 147
                     6***************987776.8888**************9999989*******99999999*****************9.99*********** PP

            FAR1  86 nHel 89 
                     +H l
  XP_019179927.1 148 THLL 151
                     **88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MARAYDEREN DTPMGSIGCL MNISPGSTKY WTPECEQAKK PCVGQVFPTL EGGIEFYTTY  60
ASTTGFDVRR ASQKNDRQGQ IMWKYVLCSR AGFKLSTSEG DGVGVESAEH NAQTKRRRVT  120
NRVGCNTRII FKRILGGYEV HAIEERHTHL LRKEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-09FAR1 family protein