PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180013.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 399aa    MW: 42415.8 Da    PI: 8.6755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-11333378655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  XP_019180013.1 333 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKCLQ 378
                     689*********************7....688****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MYPSSTSSSS HGSMGPSGSG GGGDGGGGLT RYGSAPSSVL SPAVDSVMSR GTRDFSALAS  60
SHHSPLGPSR YFSESAGKAA AAASNSAKEH ADNKAAPPTS AAVLQRSYNF HELAIGNGGG  120
GGGASTSTSP LVRHSSSPAR FLNQLATAAG DSNGFQVSMG LGSCQGVPES RRGVSRLNSQ  180
LSFTRQETLS QVAEEDEDVV GGSNSNSMEN NGHRKSTHSY ATGSFGVGSW RDQDHNHHHH  240
NHNHNQSVTF PHMGSWHEDK NQPVMFSITP GKRAKNTNGD IAGGLNAMET QLQFGMPQAA  300
LEMASMDRYM QIPEDSVPCK IRAKRGCATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ  360
TSYADMLDLA VQHIKCLQDK VQDLHKELEH CTCGCKKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-71bHLH family protein