PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180247.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 180aa MW: 19026.3 Da PI: 10.3074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_019180247.1 43 FECHYCRRGFASSQALGGHQNAH 65 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MSDSSSSSGE RMFIGIPVTN RGQLPPTVLR PGTDGGGGGT KRFECHYCRR GFASSQALGG 60 HQNAHKRERQ RAKLAQLSAA AGEHHQRHRL AAPTLSRPSF VVLDGISAWN QQIRSVVPLG 120 YPATTGAAGF HIGRSPVTVM AAFPASDCRD NTMDSPANFA TSSEVDGGVG IDLHLRLAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-16	C2H2 family protein