PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180250.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 255aa MW: 27929.3 Da PI: 6.8656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.7e-38	59	160	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf p+e +++fa++h++FGasnv+kll ++p ++r+ a+ s+ +eAear+ dPvyG+v++il+l+qq+++l+ael XP_019180250.1 59 PCGACKFLRRKCVPECIFAPYFdPDEGTARFAAIHRVFGASNVSKLLMHIPADRRPGAVISISFEAEARQADPVYGCVSTILALKQQVSSLEAEL 153 7*******************656669*************************************************************** PP DUF260 95 allkeel 101 a++k+++ XP_019180250.1 154 AMVKTQI 160 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MDSSHNYFNS SSINSGILNT DAAYPQGGGA SSSATAAPRR NYTAGRAAVS ESRAARGGPC 60 GACKFLRRKC VPECIFAPYF DPDEGTARFA AIHRVFGASN VSKLLMHIPA DRRPGAVISI 120 SFEAEARQAD PVYGCVSTIL ALKQQVSSLE AELAMVKTQI VINRFAAENN LQTLQHQQQQ 180 QEQNAAIIME QPVYLNNTFF DPNSLLNLSN FTTNYNYIGE ATPPISQSLS PIFQPPNPDQ 240 EHTHYPLHFT NQMFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-54	LBD family protein