PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180619.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 161aa MW: 17780.1 Da PI: 9.4381

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	142.9	3.3e-44	5	145	4	163
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + sse++Cyv+C+fCnt+lav +P + ++++vtv+CGhC++l l++ l+ + +++ +++ v+ + +k +++++s+++ XP_019180619.1 5 QPSSEHLCYVRCSFCNTVLAVGIPCKRVLETVTVKCGHCSNLSF---------LSTRPPLQPQCHDHHANNFPVSCNGFKRGQSSSSSPTS---- 86 5789**********************************9754.........23333333344445555555555555554444444443.... PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_019180619.1 87 ------SEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 145 ......4456899999*********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MDLAQPSSEH LCYVRCSFCN TVLAVGIPCK RVLETVTVKC GHCSNLSFLS TRPPLQPQCH 60 DHHANNFPVS CNGFKRGQSS SSSPTSSEPS SPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ 120 RIKAANPEIP HREAFSAAAK NWARYIPNTP SRSTSESNSN A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	7e-63	YABBY family protein