PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180750.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 476aa MW: 51688.5 Da PI: 5.5271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	307	355	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019180750.1 307 NSHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 355 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MDMSGKDDTE TAKRNEDALN FHSDNMPSDW QLNGANLANV SMGMIPNSNP MTDSFWAINS 60 VNLGYRDANV LPGVSSGSNL LGSGLDRNVG MFFPTPSGML PQSLPQFPGD SGFIERAARF 120 SCFSGGNLCD PIPINPFNTT EPMNPYANKG VMPTQKPREV FVGNEYRDHE MTNVAESSKE 180 GSLPIDGAAE GSRPRNGTKN ENAFEAKQCV EGSGNESDEP ECSSPGDQEV SEGTGRESPA 240 KGLASKKRKR GGRQADLDKK DQTEIQQNLI SNASKQGGKN GKQGAQASDS TKEEYIHVRA 300 RRGQATNSHS LAERVRREKI SQRMKLLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF 360 LSMKLSTVIP RLDFNIDGLL AKDILQSQTG PSSSLAFPPD ITMPFPPINP LQAGLPGYGN 420 PINALQRTIN SEKATVNVPS VWDNELHNVF HIGFKPNAPL NSQDHSSLPP QTNSES

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MDMSGKDDTE TAKRNEDALN FHSDNMPSDW QLNGANLANV SMGMIPNSNP MTDSFWAINS  60
VNLGYRDANV LPGVSSGSNL LGSGLDRNVG MFFPTPSGML PQSLPQFPGD SGFIERAARF  120
SCFSGGNLCD PIPINPFNTT EPMNPYANKG VMPTQKPREV FVGNEYRDHE MTNVAESSKE  180
GSLPIDGAAE GSRPRNGTKN ENAFEAKQCV EGSGNESDEP ECSSPGDQEV SEGTGRESPA  240
KGLASKKRKR GGRQADLDKK DQTEIQQNLI SNASKQGGKN GKQGAQASDS TKEEYIHVRA  300
RRGQATNSHS LAERVRREKI SQRMKLLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  360
LSMKLSTVIP RLDFNIDGLL AKDILQSQTG PSSSLAFPPD ITMPFPPINP LQAGLPGYGN  420
PINALQRTIN SEKATVNVPS VWDNELHNVF HIGFKPNAPL NSQDHSSLPP QTNSES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-87	bHLH family protein