PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180767.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 245aa MW: 28257 Da PI: 9.224

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.4e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv++v+ +G g+W+++ar g++R +k+c++rw +yl XP_019180767.1 17 KGPWTAEEDRLLVEYVRFHGEGRWNSVARFAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	54	3.8e-17	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++vd+++++G++ W+tIar ++ gRt++++k++w+++ XP_019180767.1 70 RGQITPHEERIIVDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MMGTEQMGWG IMAGWRKGPW TAEEDRLLVE YVRFHGEGRW NSVARFAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPHEERI IVDLHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAA 120 ANSSDHPKPR ILRQQQQQQK KKQEESNHQI DMRKMMSSFE EIDENRLSSV PQPQIAAGLL 180 SDQEQQGFLS SMIHGCAEVP EPSSSTEDII MCDGLWNLDD FHGSFSPMAS ANKACFLQPV 240 AAPFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-80	MYB family protein