PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180835.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 680aa MW: 74025.2 Da PI: 6.4326

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.2e-29	218	271	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_019180835.1 218 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 271 79*****************.******************************8 PP
2	Myb_DNA-binding	42.6	1.4e-13	220	270	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qky+ XP_019180835.1 220 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 270 678***********************************************7 PP
3	Response_reg	71.2	4.2e-24	37	145	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ y ev+ +e al ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + + G XP_019180835.1 37 VLVVDDDPTCLRILEKMLRTCLY-EVTKSNRAELALSLLRENKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKNVVMKGVTHG 129 89*******************.***********999999******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_019180835.1 130 ACDYLIKPVRIEALKN 145 **********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MNLGGGQVGK GMSATCSNAS WKSGDAVSDK FPAGLRVLVV DDDPTCLRIL EKMLRTCLYE 60 VTKSNRAELA LSLLRENKNG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKN 120 VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKHEWKE KDPEQSGSAE EGGDRPQKPS 180 DDADYSSSVN EGNWKSSKKR KDEEDEGEER DDSSTLKKPR VVWSVELHQQ FVAAVNQLGI 240 DKAVPKKILE LMNVPGLTRE NVASHLQKYR LYLRRLSGQG GLGNSFMGHP ESPFGSMSSL 300 NGLDLQALAA SGQISAQSLA TFQAAALGSS VTKSAISMPL VDQRNLFSFE NPKSRFGDGP 360 PQMGNSSKQI GLLHGIPTTM EPKQLASLHQ SSPTFGGMSM QLNSQVHQNN PLLMQMAQTQ 420 PRAQMVNDPN GGQASRLPLS VPQPLLTGGV LGGNSIVDNS VSHAPSTVAF SVNQGTELQT 480 NSYTTSNSGV SSLTSRGMLR EQANPDVKGT RGFVPGYDIF NDLHQHKAQD WGLQNVGTTF 540 DAPPHHFLDA PPSVMAQHGF SSNQKRNAPI NKDVFLSGEE TGHGGNNPML GPQFNSLLGG 600 GNPVTIKTER LPDTTFQNTL FSDQYGQDDL MSALLKQQQD NSLGPVENEF GFDGYQLDNL 660 PVLHPTMLIH SRTNIPLDPK

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MNLGGGQVGK GMSATCSNAS WKSGDAVSDK FPAGLRVLVV DDDPTCLRIL EKMLRTCLYE  60
VTKSNRAELA LSLLRENKNG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKN  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKHEWKE KDPEQSGSAE EGGDRPQKPS  180
DDADYSSSVN EGNWKSSKKR KDEEDEGEER DDSSTLKKPR VVWSVELHQQ FVAAVNQLGI  240
DKAVPKKILE LMNVPGLTRE NVASHLQKYR LYLRRLSGQG GLGNSFMGHP ESPFGSMSSL  300
NGLDLQALAA SGQISAQSLA TFQAAALGSS VTKSAISMPL VDQRNLFSFE NPKSRFGDGP  360
PQMGNSSKQI GLLHGIPTTM EPKQLASLHQ SSPTFGGMSM QLNSQVHQNN PLLMQMAQTQ  420
PRAQMVNDPN GGQASRLPLS VPQPLLTGGV LGGNSIVDNS VSHAPSTVAF SVNQGTELQT  480
NSYTTSNSGV SSLTSRGMLR EQANPDVKGT RGFVPGYDIF NDLHQHKAQD WGLQNVGTTF  540
DAPPHHFLDA PPSVMAQHGF SSNQKRNAPI NKDVFLSGEE TGHGGNNPML GPQFNSLLGG  600
GNPVTIKTER LPDTTFQNTL FSDQYGQDDL MSALLKQQQD NSLGPVENEF GFDGYQLDNL  660
PVLHPTMLIH SRTNIPLDPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	0.0	ARR-B family protein