PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180842.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 157aa    MW: 16357.4 Da    PI: 10.8313
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-193266135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ CgttkTplWR gp g+k+LCnaCG++ rk+++
  XP_019180842.1 32 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKRRR 66
                    ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MVDLSDRGSE SEDMSSQTPT PERETNTQIK TCADCGTTKT PLWRGGPAGP KSLCNACGIR  60
SRKRRRALLG LNKDDKKSKK SAGGGGSNKN SSGSSSDSGS SSGGISPGSG GGGRRFLPFG  120
REVALQKPRS QQARRKMGEV EKAAFLLMAL SCGSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-28GATA family protein