PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180980.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 388aa MW: 42321.7 Da PI: 4.9022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	183	234	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_019180980.1 183 QRMTHIAVERNRRKQMNEHLRVLRTLMPGS---YVQRGDQASIIGGAIEFVRELE 234 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MEKEDNYTAS LPPSFPGLDY SPHVGQTSCG NTNQMVDYMV NGHPTAAPPP QPPLVPGFCG 60 GGSTSLDKLS FADVMQFADF GPKLGLNEAK GSDEETGLDP VYFLKFPVLN EKVQGGDEQF 120 NDQEPGKEGG GSKEDGGAAA AAAVQLRFLD ENIEKYPPAA AAEGNKGKRK RPRIKTNEEV 180 ESQRMTHIAV ERNRRKQMNE HLRVLRTLMP GSYVQRGDQA SIIGGAIEFV RELEQLLQCL 240 ESQKRRRLYG DAPAVRPMAA AGDSSTSSLP PIPQQEQPPF FPEFEAAAAG ICEETAGSKS 300 CLADVEVKLL GFDGMIKILS RRRPSQLIKV IAALEDLQLS ILHTNITTIE QTVLYSFNVK 360 ISSETRYTAE DLANSVQQIF SFINSNSI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MEKEDNYTAS LPPSFPGLDY SPHVGQTSCG NTNQMVDYMV NGHPTAAPPP QPPLVPGFCG  60
GGSTSLDKLS FADVMQFADF GPKLGLNEAK GSDEETGLDP VYFLKFPVLN EKVQGGDEQF  120
NDQEPGKEGG GSKEDGGAAA AAAVQLRFLD ENIEKYPPAA AAEGNKGKRK RPRIKTNEEV  180
ESQRMTHIAV ERNRRKQMNE HLRVLRTLMP GSYVQRGDQA SIIGGAIEFV RELEQLLQCL  240
ESQKRRRLYG DAPAVRPMAA AGDSSTSSLP PIPQQEQPPF FPEFEAAAAG ICEETAGSKS  300
CLADVEVKLL GFDGMIKILS RRRPSQLIKV IAALEDLQLS ILHTNITTIE QTVLYSFNVK  360
ISSETRYTAE DLANSVQQIF SFINSNSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	195	RMTHIAVERNRR
2	244	248	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-117	bHLH family protein