PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181001.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 362aa MW: 39524.9 Da PI: 5.0509

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.8	1.3e-27	47	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rr++ + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ ++l+ XP_019181001.1 47 RWTRQEILVLIQGKRVAESRVRRRRtagmefgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLR 141 8*******************976667777777*******************************************99999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MALEGLSLAR APAEAETEVG GGRLVAAAAV NGGGGGDDGS KAPRLPRWTR QEILVLIQGK 60 RVAESRVRRR RTAGMEFGSG QVEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDYKKIK 120 EWESQIREET ESFWVMRNDL RRERKLPGFF DREVYDILDR GDDAVAAAAA EEVTGALALA 180 LGPSVAPGTD DPDPETLFDS GRSAAADDGL FSDFEQSGQE EAGVASPRKD LPAAEEVPPT 240 AIPAPIPISE QQYEPFSQET PAQGTSHQKQ AASEPDLRSG QEGRKRKRNM TDTDADADEE 300 SENLQHQLVK ALERNGKLLS SQLEAQNAHL QLDREQRKDH VNSLIAVLNK LSDALGRIAD 360 KL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MALEGLSLAR APAEAETEVG GGRLVAAAAV NGGGGGDDGS KAPRLPRWTR QEILVLIQGK  60
RVAESRVRRR RTAGMEFGSG QVEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDYKKIK  120
EWESQIREET ESFWVMRNDL RRERKLPGFF DREVYDILDR GDDAVAAAAA EEVTGALALA  180
LGPSVAPGTD DPDPETLFDS GRSAAADDGL FSDFEQSGQE EAGVASPRKD LPAAEEVPPT  240
AIPAPIPISE QQYEPFSQET PAQGTSHQKQ AASEPDLRSG QEGRKRKRNM TDTDADADEE  300
SENLQHQLVK ALERNGKLLS SQLEAQNAHL QLDREQRKDH VNSLIAVLNK LSDALGRIAD  360
KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-99	Trihelix family protein