PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181124.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 489aa MW: 51230.6 Da PI: 7.9289

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tG+C yG+rC+F+H++ XP_019181124.1 52 EADCMYYLKTGFCGYGARCRFNHPR 76 689********************96 PP
2	zf-CCCH	37	5.5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_019181124.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP
3	zf-CCCH	34.2	4.2e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H+p XP_019181124.1 143 GEKECSYYVKTGHCKFGVTCKFHHPP 168 7899********************97 PP
4	zf-CCCH	37.7	3.4e-12	316	340	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG+Ck+G++C+++H+p XP_019181124.1 316 LPECQHYMKTGECKFGSSCRYHHPP 340 689********************97 PP
5	zf-CCCH	36.7	6.9e-12	362	386	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G+Ck+G++CkF H++ XP_019181124.1 362 APICSHYAQNGICKFGPSCKFDHPM 386 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MERYSGTQVM EGAPVDPVAE WTTPVGETGL EEPMWRLSLG GGTESYPERP NEADCMYYLK 60 TGFCGYGARC RFNHPRDRNL AVRAMRPTGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSQAP VALNVYGYPL RPGEKECSYY VKTGHCKFGV TCKFHHPPPV GEQMPLPTAG 180 PGPLLPPTPV AAPGIFPTVQ SPSVQSSQQY GVMPGNWPIS RPGLLPPGSY IPGTYSPMLI 240 PPGMVAVPGG WTPYPGPVNP VASPSTQPAG PGPVYGLTQL APPAPAYSGA YMSVGSSAGP 300 SGGNQKEHAY PQRPGLPECQ HYMKTGECKF GSSCRYHHPP EFSETKTNFL LSPMGLPLRP 360 GAPICSHYAQ NGICKFGPSC KFDHPMGALS YSPSASSLAD MPVAPYPVGS SIGTLAPSSS 420 SSDLRPELIS GSGSEAFSTQ TSSMSTSSGA VGSIFSNTGP ASHSGVQPSG QSSSGSGSTG 480 HGGEVHSSS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MERYSGTQVM EGAPVDPVAE WTTPVGETGL EEPMWRLSLG GGTESYPERP NEADCMYYLK  60
TGFCGYGARC RFNHPRDRNL AVRAMRPTGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSQAP VALNVYGYPL RPGEKECSYY VKTGHCKFGV TCKFHHPPPV GEQMPLPTAG  180
PGPLLPPTPV AAPGIFPTVQ SPSVQSSQQY GVMPGNWPIS RPGLLPPGSY IPGTYSPMLI  240
PPGMVAVPGG WTPYPGPVNP VASPSTQPAG PGPVYGLTQL APPAPAYSGA YMSVGSSAGP  300
SGGNQKEHAY PQRPGLPECQ HYMKTGECKF GSSCRYHHPP EFSETKTNFL LSPMGLPLRP  360
GAPICSHYAQ NGICKFGPSC KFDHPMGALS YSPSASSLAD MPVAPYPVGS SIGTLAPSSS  420
SSDLRPELIS GSGSEAFSTQ TSSMSTSSGA VGSIFSNTGP ASHSGVQPSG QSSSGSGSTG  480
HGGEVHSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-134	C3H family protein