PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181215.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 266aa MW: 30750.9 Da PI: 9.8259

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++a+ g++R +k+c++rw +yl XP_019181215.1 24 KGPWTAEEDRLLIQYVKLHGEGRWNSVAKLQGLKRNGKSCRLRWVNYL 71 79****************************99**********97 PP
2	Myb_DNA-binding	53.5	5.7e-17	77	121	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_019181215.1 77 RGQITPHEERIIIELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MSIGMMVAAE EMMGWGVLNE GWRKGPWTAE EDRLLIQYVK LHGEGRWNSV AKLQGLKRNG 60 KSCRLRWVNY LRPDLKRGQI TPHEERIIIE LHAKWGNRWS TIARSLPGRT DNEIKNYWRT 120 HFKKKAKSSA ADNTEKSRAR LLRKQQFHLQ QLQQQQQQQY NIHQTDTKKV KPLLFDENNE 180 TRVTAPTVIP QGQGGVFYPD QDQGFFFSLM NGYIPSLPEA LLSSNDNQDS IMWDGLWNLD 240 EFQGNFCAVS AANKICSLQP IAAPFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	7e-87	MYB family protein