PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181230.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

RAV

Protein Properties

Length: 368aa MW: 41048.2 Da PI: 9.6168

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.3	7.9e-13	62	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g XP_019181230.1 62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARVYDIAAQRFRG 110 689*9788.8*****3.....5***********************98 PP
2	B3	101.2	6.1e-32	190	290	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk+ ae+h g ++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++ e+ XP_019181230.1 190 FEKAVTPSDVGKLNRLVIPKQQAEKHfplqnGAVTSKGVLLNFEDTNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFHRSTGPEK 284 89***************************99999**************************************************8766777 PP ..EEEE CS B3 91 elvvkv 96 +l++ + XP_019181230.1 285 QLFIDW 290 677766 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDASSIDESS SSDSMSVAHA SALNLPATKS PESLCRMGSG ASVIIDAENG VEAESGRKLP 60 SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARV YDIAAQRFRG RDAVTNFKPL 120 SETTDGRNGD DDYEAVFLSS HSKAEIVDML RKHTYTDELE QSRRAFNINN MTTPRKPEAD 180 RSAKSRERLF EKAVTPSDVG KLNRLVIPKQ QAEKHFPLQN GAVTSKGVLL NFEDTNGKVW 240 RFRYSYWNSS QSYVLTKGWS RFVKEKSLKA GDIVSFHRST GPEKQLFIDW KARNGTGSPD 300 ISTVPVHPVQ VFRLFGVNIS KSTVSPMAMA MDTTNNISSC SGGKRIREVV MEFLPLECSK 360 KQRVIDAL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDASSIDESS SSDSMSVAHA SALNLPATKS PESLCRMGSG ASVIIDAENG VEAESGRKLP  60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARV YDIAAQRFRG RDAVTNFKPL  120
SETTDGRNGD DDYEAVFLSS HSKAEIVDML RKHTYTDELE QSRRAFNINN MTTPRKPEAD  180
RSAKSRERLF EKAVTPSDVG KLNRLVIPKQ QAEKHFPLQN GAVTSKGVLL NFEDTNGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKSLKA GDIVSFHRST GPEKQLFIDW KARNGTGSPD  300
ISTVPVHPVQ VFRLFGVNIS KSTVSPMAMA MDTTNNISSC SGGKRIREVV MEFLPLECSK  360
KQRVIDAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-140	RAV family protein