PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181239.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 492aa MW: 53391.1 Da PI: 6.8159

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7e-07	30	60	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++++ lfC+ + lC C ++ H XP_019181239.1 30 PCDFCNDQPAVLFCRADAAKLCLFCDQHVHA 60 6***************************995 PP
2	zf-B_box	19.1	2.6e-06	71	115	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++ +++ C + + lC++C H + H+++p XP_019181239.1 71 SQICDNCGAEPVAVRCSSENLVLCQECDWDAHAScavsaaHDRSP 115 579*************************99997788888888776 PP
3	CCT	65	2.3e-22	444	487	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeKrktR+++K+irYesRKa+A++R+RvKGrFvk+a XP_019181239.1 444 RGNAMLRYKEKRKTRRYDKHIRYESRKARADTRKRVKGRFVKAA 487 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MEASTHPSSD GVGAEMVGAG SKSGRGKTVP CDFCNDQPAV LFCRADAAKL CLFCDQHVHA 60 ANALSRKHLR SQICDNCGAE PVAVRCSSEN LVLCQECDWD AHASCAVSAA HDRSPVEAFS 120 GCPVAAELAG IWGLEIEEKK SNQLPGPNPT WTGLLDPWMP KEISPSVLLQ DLMVPSNNPV 180 VYSNPAGGCE PSKKQTPSCG KNKPVILKQL VELFKREALD GGAAAGGEDI VPRTPNGGGS 240 GWQGNAADGG DGAAAALNHH FQPEQQQPQN VPFTSLLMMQ TPMKENDRMV EGNMLWNNAS 300 RDRSPQIWDF NLGQLRDHDE SSPIEVGYGA NDVAYMMKSY SELLKEASLA NPKGSELSRM 360 NFSVTHEDLA AFGNVSNNPT ASQGPATSES NNIPRLQPPL VSGYSKPKCH SKDIHFMDQT 420 ILVDSESATP SMTKADMEML VKNRGNAMLR YKEKRKTRRY DKHIRYESRK ARADTRKRVK 480 GRFVKAAEAP DG

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MEASTHPSSD GVGAEMVGAG SKSGRGKTVP CDFCNDQPAV LFCRADAAKL CLFCDQHVHA  60
ANALSRKHLR SQICDNCGAE PVAVRCSSEN LVLCQECDWD AHASCAVSAA HDRSPVEAFS  120
GCPVAAELAG IWGLEIEEKK SNQLPGPNPT WTGLLDPWMP KEISPSVLLQ DLMVPSNNPV  180
VYSNPAGGCE PSKKQTPSCG KNKPVILKQL VELFKREALD GGAAAGGEDI VPRTPNGGGS  240
GWQGNAADGG DGAAAALNHH FQPEQQQPQN VPFTSLLMMQ TPMKENDRMV EGNMLWNNAS  300
RDRSPQIWDF NLGQLRDHDE SSPIEVGYGA NDVAYMMKSY SELLKEASLA NPKGSELSRM  360
NFSVTHEDLA AFGNVSNNPT ASQGPATSES NNIPRLQPPL VSGYSKPKCH SKDIHFMDQT  420
ILVDSESATP SMTKADMEML VKNRGNAMLR YKEKRKTRRY DKHIRYESRK ARADTRKRVK  480
GRFVKAAEAP DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-106	CO-like family protein