PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181345.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 249aa MW: 28078.3 Da PI: 5.5917

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_019181345.1 14 KGPWSPEEDQILISYIQRNGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_019181345.1 67 RGNFTKEEEDAIIHLHETLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MVRAPCCDKI GVKKGPWSPE EDQILISYIQ RNGHGNWRAL PKQAGLLRCG KSCRLRWINY 60 LSPEIKRGNF TKEEEDAIIH LHETLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLSNYE 120 PTKKHPTKTT TATSEKHSDI QHGTGPTSPH QTSSSDDMSS SSSATDSSAI TEDPAMIKLE 180 NADSAEGFVE IDESFWTEVP SFGSTVSSLE NFMEQSGGDM NMNMMVEDDR DFWYNLFVRA 240 GELTELLEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-77	MYB family protein