PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019181509.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 220aa    MW: 24300.3 Da    PI: 9.6767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019181509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19134168135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_019181509.1 134 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 168
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MEDMEEELEW LSNKDAFPGV ETCFGIFGEN PLFDHKSPVS VLENSSSTSN SNSNSNSGGN  60
GMISCYDSLR VPVNYPTRPR SKNRKRRETG IGYLPLRNCL WVNHVKNKNH RQQSSFKALP  120
ATAAGETPTI GRRCQHCGVD KTPQWRAGPM GPKTLCNACG VRYKSGRLLP EYRPANSPTF  180
SAAVHSNSHR KVLEMRRQKV GGKDGIPSNE ACGYRVASGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.18e-47GATA family protein