PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181648.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 143aa MW: 14922.5 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	46.2	7.4e-15	29	53	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V XP_019181648.1 29 CSGCRNLLMYPVGATSVCCAVCNAV 53 ************************9 PP
2	zf-LSD1	46.8	4.7e-15	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_019181648.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP
3	zf-LSD1	41.9	1.6e-13	106	130	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_019181648.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MPVPLAPYPT PPAPYMPPAN AGTQSQLVCS GCRNLLMYPV GATSVCCAVC NAVTAVPPPG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR 120 SVKCAVCNFV TSVGVSASTN DQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-66	LSD family protein