PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019181977.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 684aa    MW: 74392.3 Da    PI: 6.4702
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019181977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_019181977.1 208 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 261
                     79*******************.********************************8 PP
2Myb_DNA-binding36.98.2e-12210260148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+  g+t++++ s++qky+
   XP_019181977.1 210 RVVWSIELHRKFVAAVNQLGIEkaVPKRILDLMNvDGLTRENVASHLQKYR 260
                      678***********************************************7 PP
3Response_reg75.81.6e-25261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+ +l+k +y +v+  ++++ al++l++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  G
  XP_019181977.1  26 VLAVDDDPICLKLLEGLLRKCQY-HVTISSQARMALKMLRDNRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGITHG 118
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_019181977.1 119 ACDYLVKPVRIEELRN 134
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MTVEEIRGHM GSEKGNHDNF PVGMRVLAVD DDPICLKLLE GLLRKCQYHV TISSQARMAL  60
KMLRDNRDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDPKL VMKGITHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKLEPKSQ NKSGDQDRSP HGGGEGGQGA PLSGSTDQNG  180
KLNKKRKDEE DESDENGHEN EDPSTQKKPR VVWSIELHRK FVAAVNQLGI EKAVPKRILD  240
LMNVDGLTRE NVASHLQKYR LYLKRISSVA TQQANMVAAF GGKDSAYMRM GSLDGLGDFR  300
TLAGSGRFSH ASLSSYTPGG MLGRLNSAAG VSIRNLTSPS LIQPSHGQNL GKPLGTLGKL  360
TPNVSQNACL FQGIPSSLEL DQFQQSDGIR DLNPLDDSTL LGAANTFTDP GSGIGSSSNP  420
MMLHGNSQLA AGGIGNQHSL NMASLNSEHF NIGVGGSSNF LDHGRASDNW QNPIQVTNFQ  480
SSSLPLTETF NQGQMQQNCA RENNSSIAPH LQGGCAGYSS LSSTATPFED SRGEIQRRER  540
LVVGDAIPSI NHQWGELKQN PNSNGVYSNL TAQVPASSIV PPLSQSMDLC NDTGNRRMDA  600
SGQSNLGGSS VLLQHNKNEK LSTESRARYY EDYLFEPPKP QGAFPSQGYG SLDDLMSSVI  660
KREQDGATLE GEFGFDAYSF GPCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-123ARR-B family protein