PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019181998.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 331aa    MW: 37009.8 Da    PI: 6.6216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019181998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+teEd++l+d++++ G g+W +++++ g++R++k+c++rw +yl
   XP_019181998.1 16 KGPWSTEEDKKLADYIHENGIGNWQLVPKRAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding49.59.5e-1669114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ E+  +++++kqlG++ W++Ia++++ gRt++++k++++++
   XP_019181998.1  69 RGSFSEAEENMIIQLHKQLGNR-WSKIAAKLPAGRTDNEVKNYFNTH 114
                      899*******************.*********************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MGRYPCCKES SAELKKGPWS TEEDKKLADY IHENGIGNWQ LVPKRAGLNR CGKSCRLRWT  60
NYLRPDIKRG SFSEAEENMI IQLHKQLGNR WSKIAAKLPA GRTDNEVKNY FNTHIKKKLM  120
RMGIDPITHK PLPNLNHLLN NLPHNYYNSF NNNNPIISPL ESILRLQANL TQMANAQLLQ  180
NIAQILNNNN IPLPLVQNNI NNVPLLLNNN NVTTFDNFNV GSNESPLFDH PLSTTPNSYT  240
IESVLDQPSP MSNSFGFVPG NDDLVPRVLT SNISSLPPLV SATPETSISD QMFPMGAMQC  300
GSGGGDDDDF SAWEKVFCDE GNSSLLESIF Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-64MYB family protein