PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182079.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 240aa    MW: 27313.8 Da    PI: 4.6269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-145092754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i++ A++YI++L
  XP_019182079.1 50 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIVKDAIDYIQEL 92
                    57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MENIGENIWD ASTLFQSEDL DSYLDEAIFS YYDSSSPDGE QSPAASKNIV SERNRRKKLN  60
ERLFALRAVV PNISKMDKAS IVKDAIDYIQ ELHEQERRIK SEISELESER SKRNIVFELD  120
QEGISLNSKP KRTRIDEQYC HDSPNSRSPV DVLELRVSSM GEKTLVVSLT CSKRTDTMVK  180
LCEIFESLNI KIISATITAF SGRLLKTVFI EAEEEEKEIL KIRIESAIAT LNDPDSPMSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-72bHLH family protein